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BICF NGS Sequence Analysis

This 4 day course will cover Human NGS including sequence alignment, mutation detection, expression analysis and gene regulation.

Topics covered will include: - Basic unix for running analysis on the command line - Sequence Alignment - Variant Detection in families and tumors - Variant Prioritization to identify association with disease - Gene Expression Analysis using RNASeq - Gene Regulation Analysis using ChIPSeq and ATACSeq - Integrated Analysis of Gene Expression and Regulation

Contacts

Computer Requirements

  • Computer that is either (i) on campus and can connect to the campus wifi/ethernet (not guest wifi) or (ii) off campus and can connect to the campus network with VPN
  • TEAMS and Zoom application

Basic Unix

Basic Unix

Schedule

Time Topic Instructor
October 5th 2020
09:00 - 5 p.m. Sequencing and Sequence Alignment
Sequence Alignment Workshop
Daehwan Kim
October 12th 2020
09:00 - 5 p.m. Variant Calling: SNVs, InDel and SVs
Variant Calling Workshop
Variant Prioritization in Cancer and in Trios
Variant Prioritization Workshop
Brandi Cantarel
October 19th 2020
09:00 - 5 p.m. ATACSeq and ChIP-Seq survival Gary Hon
October 26th 2020
09:00 - 5 p.m. Gene Expression Analysis
Gene Expression Analysis Workshop
Venkat Malladi