Student Project Ideas
 Pick a dataset from the class or from your own work.

 Plot 2 continuous variables and add a trend lines.

 Create boxlots using a continuous variable and a categorical variable.

 Add text to indicate the mean of each group on the plot (type mtext)

 Present the summary statistics for the comparison between a continuous variable and a categorical variable.
 With the RNASeq Data used in the Demo

 Calculate logCMP from RNASeq

 Make a heatmap of the a subset of genes; chose 10 or 20 genes

 Choose 2 genes to make boxplots comparing the expression with the (see design.txt)

 Create a 3D plots to show the expression of 3 genes.
 Create 3 vectors using random functions for classic distributions see the Distribution Help Page

 Plot these vectors as histograms, cumulative distribution function and density function.
 Pick a package in bioconductor

 Prepare 510 slides to show the other students in the class on how to use this function from installation to some final plot.

 Have your own question? Students who want to design their own project should send Brandi Cantarel an email on the topic.